chore: refactor Gradle config, standardize Kotlin MPP plugin usage, and update dependencies
- Unified plugin application across modules using `alias(libs.plugins.*)` instead of hardcoded IDs. - Removed redundant JVM/JS source map tasks, improving Gradle and Docker build consistency. - Updated dependencies, including `logback` and Webpack `copy-webpack-plugin`, and added contextual documentation. - Added frontend architecture diagram in PlantUML (`docs/01_Architecture/Reference`), standardizing feature-core-shell dependencies.
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